Abstract. Two nearly identical meteor radars were operated at Koto Tabang (0.20° S, 100.32° E), West Sumatra, and Biak (1.17° S, 136.10° E), West Papua, in Indonesia, separated by approximately 4000 km in longitude on the Equator. The zonal and meridional momentum flux, u′w′ and v′w′, where u, v, and w are the eastward, northward, and vertical wind velocity components, respectively, were estimated at 86 to 94 km altitudes using the meteor radar data by applying a method proposed by Hocking (2005). The observed u′w′ at the two sites agreed reasonably well at 86, 90, and 94 km during the observation periods when the data acquisition rate was sufficiently large enough. Variations in v′w′ were consistent between 86, 90, and 94 km altitudes at both sites. The climatological variation in the monthly averaged u′w′ and v′w′ was investigated using the long-term radar data at Koto Tabang from November 2002 to November 2013. The seasonal variations in u′w′ and v′w′ showed a repeatable semiannual and annual cycles, respectively. u′w′ showed eastward values in February–April and July–September and v′w′ was northward in June to August at 90–94 km, both of which were generally anti-phase with the mean zonal and meridional winds, having the same periodicity. Our results suggest the usefulness of the Hocking method.