Abstract. Simultaneous observations of the mean zonal winds at 88 km obtained by the medium-frequency (MF) radars at Kolhapur (16.8° N, 74.2° E) and Tirunelveli (8.7° N, 77.8° E) have been used to study the intraseasonal oscillation (ISO) in the MLT region. The influences of the intraseasonal variations in the lower tropospheric convective activity associated with the Madden-Julian oscillations on the latitudinal behavior of intraseasonal oscillations (ISO) of the zonal winds in the equatorial mesosphere and lower thermosphere (MLT) have been studied. The ISO activity in the lower tropospheric convective activity is examined by employing outgoing long wave radiation (OLR) as a proxy for deep convective activity occurring in the tropical lower atmosphere. The ISO activity in the zonal wind over TIR is more correlated with that in the convective activity compared to the ISO over KOL. The latitudinal and temporal variabilities of the ISO in MLT zonal winds are explained in terms of the intraseasonal variabilities in the convective activity.